Fix the structure before you dock

Model missing loops, resolve steric clashes and refine low-confidence regions — most docking servers accept whatever you give them, we repair it first.

Loop modelingClash resolutionLow-confidence refinement
Repair a structure
Markov state model of protein folding pathways from the unfolded to the native state
Unique to VigyanLLM

Regenerative Protein Folding

Most docking servers accept whatever structure you give them. We fix it first — modeling missing loops, resolving clashes, and refining low-confidence regions.

📋 Input Protein Structure

Paste PDB content or fetch from RCSB. The engine will analyze and repair structural defects.

🔧 Repair Options

Select which repairs to apply. All enabled by default for best results.

Before

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After

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📥 Export Repaired Structure

Download the repaired PDB or use it for docking.